qtl2dplotly {gap} | R Documentation |
2D QTL plotly
Description
2D QTL plotly
Usage
qtl2dplotly(
d,
chrlen = gap::hg19,
qtl.id = "SNPid:",
qtl.prefix = "QTL:",
qtl.gene = "Gene:",
target.type = "Protein",
TSS = FALSE,
xlab = "QTL position",
ylab = "Gene position",
...
)
Arguments
d |
Data in qtl2dplot() format. |
chrlen |
Lengths of chromosomes for specific build: hg18, hg19, hg38. |
qtl.id |
QTL id. |
qtl.prefix |
QTL prefix. |
qtl.gene |
QTL gene. |
target.type |
Type of target, e.g., protein. |
TSS |
to use TSS when TRUE. |
xlab |
X-axis title. |
ylab |
Y-axis title. |
... |
Additional arguments, e.g., target, log10p, to qtl2dplot. |
Value
A plotly figure.
Examples
## Not run:
INF <- Sys.getenv("INF")
d <- read.csv(file.path(INF,"work","INF1.merge.cis.vs.trans"),as.is=TRUE)
r <- qtl2dplotly(d)
htmlwidgets::saveWidget(r,file=file.path(INF,"INF1.qtl2dplotly.html"))
r
## End(Not run)
[Package gap version 1.5-3 Index]