get_b_se {gap} | R Documentation |
Get b and se from AF, n, and z
Description
The function obtains effect size and its standard error.
Usage
get_b_se(f, n, z)
Arguments
f |
Allele frequency. |
n |
Sample size. |
z |
z-statistics. |
Value
b and se.
Examples
## Not run:
library(dplyr)
# eQTLGen
cis_pQTL <- merge(read.delim('eQTLGen.lz') %>%
filter(GeneSymbol=="LTBR"),read.delim("eQTLGen.AF"),by="SNP") %>%
mutate(data.frame(get_b_se(AlleleB_all,NrSamples,Zscore)))
head(cis_pQTL,1)
SNP Pvalue SNPChr SNPPos AssessedAllele OtherAllele Zscore
rs1003563 2.308e-06 12 6424577 A G 4.7245
Gene GeneSymbol GeneChr GenePos NrCohorts NrSamples FDR
ENSG00000111321 LTBR 12 6492472 34 23991 0.006278872
BonferroniP hg19_chr hg19_pos AlleleA AlleleB allA_total allAB_total
1 12 6424577 A G 2574 8483
allB_total AlleleB_all b se
7859 0.6396966 0.04490488 0.009504684
## End(Not run)
[Package gap version 1.5-3 Index]