chrXdat {gJLS2}

X-chromosomal example using the 1000 Genomes Project data

Description

A dataset containing real genotypes of 5 X-chromosomal SNPs and simulated phenotype of 473 unrelated samples from the 1000 Genomes Project.

Usage

chrXdat

Format

A data frame with 473 rows and 11 variables:

FID

Family ID.

IID

Individual ID.

PAT

Paternal individual ID.

MAT

Maternal individual ID.

SEX

The genetic sex of a individual.

PHENOTYPE

The quantitative trait value, simulated from a standard normal distribution.

rs5983012_A

The genotype of SNP with MAF roughly equal to 0.1 in females.

rs4119090_G

The genotype of SNP with MAF roughly equal to 0.2 in females.

rs5911042_T

The genotype of SNP with MAF roughly equal to 0.3 in females.

rs986810_C

The genotype of SNP with MAF roughly equal to 0.4 in females.

rs180495_G

The genotype of SNP with MAF roughly equal to 0.45 in females.

Source

https://www.internationalgenome.org/data/