find.outliers {fsthet} | R Documentation |
This identifies all of the SNPs outside of the smoothed quantiles in the dataset.
Description
This identifies all of the SNPs outside of the smoothed quantiles in the dataset.
Usage
find.outliers(df, boot.out, ci.df = NULL, file.name = NULL)
Arguments
df |
Provide the dataframe with Ht and Fst values. |
boot.out |
Bootstrap output. You must provide this. |
ci.df |
List of confidence intervals. You may provide this in addition to bootstrap output to save a small amount of time. |
file.name |
You may provide a file name to output the outliers to a csv file. Otherwise, the function will only return the outliers. |
Value
out |
A list of the outlier loci |
Examples
## Not run:
gfile<-system.file("extdata", "example.genepop.txt",package = 'fsthet')
gpop<-my.read.gpop(gfile)
fsts<-calc.actual.fst(gpop)
boot.out<-as.data.frame(t(replicate(10, fst.boot(gpop))))
outliers<-find.outliers(fsts,boot.out)
## End(Not run)
[Package fsthet version 1.0.1 Index]