make_flocker_data_augmented {flocker} | R Documentation |
#' Format data for data-augmented occupancy model, to be passed to
flock()
.
Description
#' Format data for data-augmented occupancy model, to be passed to
flock()
.
Usage
make_flocker_data_augmented(
obs,
n_aug,
site_covs = NULL,
event_covs = NULL,
quiet = FALSE
)
Arguments
obs |
An I x J x K array where rows I are sites, columns J are repeat sampling events, and slices K are species. Allowable values are 1 (detection), 0 (no detection), and NA (no sampling event). The data must be formatted so that all NAs are trailing within their rows. |
n_aug |
Number of pseudospecies to augment |
site_covs |
A dataframe of covariates for each site that are constant across repeated sampling events. |
event_covs |
A named list of I x J matrices, each one corresponding to a covariate that varies across repeated sampling events within sites |
quiet |
Hide progress bars and informational messages? |
Value
A flocker_data list that can be passed as data to flocker()
.
[Package flocker version 1.0-0 Index]