getLocusCPT {fbnet}

getLocusCPT: a function for obtaining the coditional probability table from a specific locus.

Description

getLocusCPT: a function for obtaining the coditional probability table from a specific locus.

Usage

getLocusCPT(bn, locus, lumpingParameter = NULL, renorm = "row-wise")

Arguments

bn

A bayesian network for pedigree object with information of the genotyped members. The ped object must be in Familias format.

locus

Specified locus.

lumpingParameter

Used for stepwise mutational model.

renorm

If "row-wise" is selected, zero probability is assigned for transitions out of range.

Value

A bayesian network based on pedigree evidence and QP definition.

Examples

pbn  <- initBN(toyped)
bnet <- buildBN(pbn,QP=3)
bn1  <- buildCPTs(bnet)
locCPT <- getLocusCPT(bn1,"M1")