| batchUnmarkViterbi {extBatchMarking} | R Documentation |
batchUnmarkViterbi function provides the implementation of the Viterbi alogrithm for the unmarked model
Description
batchUnmarkViterbi function provides the implementation of the Viterbi alogrithm for the unmarked model
Usage
batchUnmarkViterbi(phi, p, lambda, gam, Umax, nBins, u)
Arguments
phi |
The probability of surviving and remaining in the population between occasions t and t +1, given an individual was alive and in the population at occasion t. This must be a number between 0 and 1. |
p |
The probability of capture at occasion t. This must be a number between 0 and 1. |
lambda |
the initial mean abundance (at occasion 1) for the unmarked population. |
gam |
The recruitment rate into the unmarked population |
Umax |
The maximum number of the unmarked individuals in the population for capture on any occasion. |
nBins |
The number of bin size into which the matrix will be divided. |
u |
The number of individuals captured at sampling occasion t that were not marked; t = 1,...,T. |
Value
Negative Log-likelihood value of the likelihood function