modelselPlot {epoc}

Plot BIC, Mallow's Cp and \lambda

Description

Plot BIC, Mallow's Cp and \lambda

Usage

modelselPlot(x, layout=NULL, k=1, showtitle=F, bthr=0, 
             showself=F, type=c('graph','modelsel'), ...)
## S3 method for class 'EPOCA'
plot(x, layout=NULL, k=1, showtitle=F, bthr=0, 
             showself=F, type=c('graph','modelsel'), ...)
## S3 method for class 'EPOCG'
plot(x, layout=NULL, k=1, showtitle=F, bthr=0, 
             showself=F, type=c('graph','modelsel'), ...)

Arguments

x

An EPoC G or EPoC A object

layout

Not used only for type='modelsel'

k

Not used for type='modelsel'

showtitle

Not used for type='modelsel'

bthr

Not used for type='modelsel'

showself

Not used for type='modelsel'

type

This page documents type='modelsel' only, for type='graph' see plot.EPOCG and epoc.bootplot

...

Parameters passed down to underlying functions, plot, lines, points, abline, axis, text and legend.

Details

Creates a plot that aids in model selection. Scale Bayesian information criterion (BIC) and Mallow's C_p between zero on one and put that on the y-axis and put relative \lambda values on the x-axis.

References

Rebecka Jörnsten, Tobias Abenius, Teresia Kling, Linnéa Schmidt, Erik Johansson, Torbjörn Nordling, Bodil Nordlander, Chris Sander, Peter Gennemark, Keiko Funa, Björn Nilsson, Linda Lindahl, Sven Nelander. (2011) Network modeling of the transcriptional effects of copy number aberrations in glioblastoma. Molecular Systems Biology 7 (to appear)

See Also

epoc