epm-example {epm}R Documentation

Eco Phylo Mapper datasets

Description

Included datasets in epm

Usage

tamiasEPM

tamiasPolyList

tamiasTraits

tamiasTree

tamiasTreeSet

Details

Included north american chipmunk dataset:
tamiasTree is a phylogeny for chipmunks from Zelditch et al. 2017
tamiasTreeSet is a distribution of 10 phylogenies for chipmunks, extracted from the mammal tree from Upham et al. 2019 tamiasTraits is a geometric morphometrics dataset of mean values for chipmunks from Zelditch et al. 2017
tamiasPolyList is a set of geographic ranges for chimpunks from IUCN 2021.
tamiasEPM is an epmGrid object created with createEPMgrid using these datasets.

References

Zelditch, M. L., Ye, J., Mitchell, J. S., & Swiderski, D. L. (2017). Rare ecomorphological convergence on a complex adaptive landscape: Body size and diet mediate evolution of jaw shape in squirrels (Sciuridae). Evolution, 1–17. https://doi.org/10.1111/evo.13168

Upham, N. S., Esselstyn, J. A., & Jetz, W. (2019). Inferring the mammal tree: Species-level sets of phylogenies for questions in ecology, evolution, and conservation. PLoS Biology, 17(12), e3000494. https://doi.org/10.1371/journal.pbio.3000494

IUCN 2021. The IUCN Red List of Threatened Species. 2021-3. https://www.iucnredlist.org. Downloaded on 17 March 2021.


[Package epm version 1.1.2 Index]