getComponents {epinetr}

Get phenotypic components.

Description

Get pedigree and phenotypic data from current population.

Usage

getComponents(pop)

Arguments

pop

a Population object

Details

Retrieves the pedigree and phenotypic data components from all individuals in the current population.

Value

Returns a data.frame giving the individual's ID, the ID of the sire, the ID of the dam, the additive, epistatic and environmental components of the phenotype and the overall phenotypic value.

Author(s)

Dion Detterer, Paul Kwan, Cedric Gondro

See Also

Population, addEffects, attachEpiNet

Examples

# Construct a population with additive and epistatic effects
pop <- Population(
  popSize = 200, map = map100snp, QTL = 20,
  alleleFrequencies = runif(100),
  broadH2 = 0.9, narrowh2 = 0.6, traitVar = 40
)
pop <- addEffects(pop)
pop <- attachEpiNet(pop)

# Retrieve phenotypic components from population
components <- getComponents(pop)