plote {enviGCMS}R Documentation

plot EIC and boxplot for all peaks and return diffreport

Description

plot EIC and boxplot for all peaks and return diffreport

Usage

plote(xset, name = "test", test = "t", nonpara = "n", ...)

Arguments

xset

xcmsset object

name

filebase of the sub dir

test

't' means two-sample welch t-test, 't.equalvar' means two-sample welch t-test with equal variance, 'wilcoxon' means rank sum wilcoxon test, 'f' means F-test, 'pairt' means paired t test, 'blockf' means Two-way analysis of variance, default 't'

nonpara

'y' means using nonparametric ranked data, 'n' means original data

...

other parameters for 'diffreport'

Value

diffreport and pdf figure for EIC and boxplot

Examples

## Not run: 
library(faahKO)
cdfpath <- system.file('cdf', package = 'faahKO')
xset <- getdata(cdfpath, pmethod = ' ')
plote(xset)

## End(Not run)

[Package enviGCMS version 0.6.6 Index]