gifmr {enviGCMS}R Documentation

plot scatter plot for rt-mz profile and output gif file for mutiple groups

Description

plot scatter plot for rt-mz profile and output gif file for mutiple groups

Usage

gifmr(
  list,
  ms = c(100, 500),
  rsdcf = 30,
  inscf = 5,
  imputation = "i",
  name = "test",
  ...
)

Arguments

list

list with data as peaks list, mz, rt and group information

ms

the mass range to plot the data

rsdcf

the rsd cutoff of all peaks in all group

inscf

Log intensity cutoff for peaks across samples. If any peaks show a intensity higher than the cutoff in any samples, this peaks would not be filtered. default 5

imputation

parameters for 'getimputation' function method

name

file name for gif file, default test

...

parameters for 'plot' function

Value

gif file

Examples

## Not run: 
data(list)
gifmr(list)

## End(Not run)

[Package enviGCMS version 0.6.6 Index]