getfilter {enviGCMS} | R Documentation |
Filter the data based on row and column index
Description
Filter the data based on row and column index
Usage
getfilter(list, rowindex = TRUE, colindex = TRUE, name = NULL, type = "o", ...)
Arguments
list |
list with data as peaks list, mz, rt and group information |
rowindex |
logical, row index to keep |
colindex |
logical, column index to keep |
name |
file name for csv and/or eic file, default NULL |
type |
csv format for further analysis, m means Metaboanalyst, a means xMSannotator, p means Mummichog(NA values are imputed by 'getimputation', and F test is used here to generate stats and p value), o means full information csv (for 'pmd' package), default o. mapo could output all those format files. |
... |
other parameters for 'getcsv' |
Value
list with remain peaks, and filtered peaks index
See Also
getdata2
,getdata
, getmzrt
, getimputation
, getmr
, getcsv
Examples
data(list)
li <- getdoe(list)
lif <- getfilter(li,rowindex = li$rsdindex)
[Package enviGCMS version 0.7.1 Index]