getdoe {enviGCMS}

Generate the group level rsd and average intensity based on DoE,

Description

Generate the group level rsd and average intensity based on DoE,

Usage

getdoe(
  list,
  inscf = 5,
  rsdcf = 100,
  rsdcft = 30,
  imputation = "l",
  tr = FALSE,
  BPPARAM = BiocParallel::bpparam()
)

Arguments

list

list with data as peaks list, mz, rt and group information

inscf

Log intensity cutoff for peaks across samples. If any peaks show a intensity higher than the cutoff in any samples, this peaks would not be filtered. default 5

rsdcf

the rsd cutoff of all peaks in all group

rsdcft

the rsd cutoff of all peaks in technical replicates

imputation

parameters for 'getimputation' function method

tr

logical. TRUE means dataset with technical replicates at the base level folder

BPPARAM

An optional BiocParallelParam instance determining the parallel back-end to be used during evaluation.

Value

list with group mean, standard deviation, and relative standard deviation for all peaks, and filtered peaks index

See Also

getdata2,getdata, getmzrt, getimputation, getmr,getpower

Examples

data(list)
getdoe(list)