getbgremove {enviGCMS}

Get the peak list with blank samples' peaks removed

Description

Get the peak list with blank samples' peaks removed

Usage

getbgremove(
  xset,
  method = "medret",
  intensity = "into",
  file = NULL,
  rsdcf = 30,
  inscf = 1000
)

Arguments

xset

the xcmsset object with blank and certain group samples' data

method

parameter for groupval function

intensity

parameter for groupval function

file

file name for further annotation, default NULL

rsdcf

rsd cutoff for peaks, default 30

inscf

intensity cutoff for peaks, default 1000

Value

diff report

Examples

## Not run: 
library(faahKO)
cdfpath <- system.file("cdf", package = "faahKO")
xset <- getdata(cdfpath, pmethod = ' ')
getbgremove(xset)

## End(Not run)