GetIntegration {enviGCMS} | R Documentation |
GetIntegration was mainly used for get the intergration of certain ion's chromatogram data and plot the data
GetIntegration(
data,
rt = c(8.3, 9),
n = 5,
m = 5,
slope = c(2, 2),
baseline = 10,
noslope = T,
smoothit = T,
half = F
)
data |
file should be a dataframe with the first column RT and second column intensity of the SIM ions. |
rt |
a rough RT range contained only one peak to get the area |
n |
points in the moving average smooth box, default value is 5 |
m |
numbers of points for regression to get the slope |
slope |
the threshold value for start/stop peak as percentage of max slope |
baseline |
numbers of the points for the baseline of the signal |
noslope |
logical, if using a horizon line to get area or not |
smoothit |
logical, if using an average smooth box or not. If using, n will be used |
half |
logical, if using the left half peak to caculate the area |
intergration data such as peak area, peak hight, signal and the slope data.
## Not run:
list <- GetIntergration(data)
## End(Not run)