enve.recplot2.seqdepth {enveomics.R}

Enveomics: Recruitment Plot (2) Sequencing Depth

Description

Calculate the sequencing depth of the given window(s).

Usage

enve.recplot2.seqdepth(x, sel, low.identity = FALSE)

Arguments

x

enve.RecPlot2 object.

sel

Window(s) for which the sequencing depth is to be calculated. If not passed, it returns the sequencing depth of all windows.

low.identity

A logical indicating if the sequencing depth is to be estimated only with low-identity matches. By default, only high-identity matches are used.

Value

Returns a numeric vector of sequencing depths (in bp/bp).

Author(s)

Luis M. Rodriguez-R [aut, cre]