MCentropy {entropart} R Documentation

## Meta-Community entropy class.

### Description

Methods for objects of type "MCentropy".

### Usage

is.MCentropy(x)
## S3 method for class 'MCentropy'
plot(x, ...)
## S3 method for class 'MCentropy'
autoplot(object, col = ggplot2::GeomCol$default_aes$fill,
border = ggplot2::GeomCol$default_aes$colour, ...)
## S3 method for class 'MCentropy'
summary(object, ...)


### Arguments

 x An object to be tested or plotted. object A MCentropy object to be summarized or plotted. col The color used to fill the bars. See "Color Specification" in par. border The color of the borders around the bars. See hist. ... Additional arguments to be passed to the generic methods.

### Value

Meta-community entropy objects are lists containing:

 MetaCommunity The name of the MetaCommunity object containing inventory data. Method The method used to calculate entropy ("HCDT", "Similarity-based"). Type The type of entropy ("alpha", "beta" or "gamma"). Order The order of entropy q. Correction The estimation bias correction used to calculate entropy. Tree The phylogenetic or functional tree used to calculate phyloentropy. Normalized Logical. Indicates whether phyloentropy is normalized or proportional to the height of the tree. Z The matrix used to calculate similarity-based entropy. Weights A vector containing the weights of communities. Communities A vector containing the entropy of communities. Total The total entropy.

is.MCentropy returns TRUE if the object is of class MCentropy.

summary.MCentropy returns a summary of the object's value.

[Package entropart version 1.6-10 Index]