MCdiversity {entropart}

Meta-Community diversity class.

Description

Methods for objects of type "MCdiversity".

Usage

is.MCdiversity(x)
## S3 method for class 'MCdiversity'
plot(x, ...)
## S3 method for class 'MCdiversity'
autoplot(object, col = ggplot2::GeomCol$default_aes$fill,
          border = ggplot2::GeomCol$default_aes$colour, ...)
## S3 method for class 'MCdiversity'
summary(object, ...)

Arguments

x

An object to be tested or plotted.

object

A MCdiversity object to be summarized or plotted.

col

The color used to fill the bars. See "Color Specification" in par.

border

The color of the borders around the bars. See hist.

...

Additional arguments to be passed to the generic methods.

Value

Meta-community diversity objects are lists containing:

MetaCommunity

The name of the MetaCommunity object containing inventory data.

Type

The type of diversity ("alpha", "beta" or "gamma").

Order

The order of diversity q.

Correction

The estimation bias correction used to calculate diversity.

Tree

The phylogenetic or functional tree used to calculate phylodiversity.

Normalized

Logical. Indicates whether phylodiversity is normalized or proportional to the height of the tree.

Weights

A vector containing the weights of communities.

Communities

A vector containing the diversity of communities.

Total

The total diversity.

is.MCdiversity returns TRUE if the object is of class MCdiversity.

summary.MCdiversity returns a summary of the object's value.