MCdiversity {entropart} | R Documentation |
Meta-Community diversity class.
Description
Methods for objects of type "MCdiversity
".
Usage
is.MCdiversity(x)
## S3 method for class 'MCdiversity'
plot(x, ...)
## S3 method for class 'MCdiversity'
autoplot(object, col = ggplot2::GeomCol$default_aes$fill,
border = ggplot2::GeomCol$default_aes$colour, ...)
## S3 method for class 'MCdiversity'
summary(object, ...)
Arguments
x |
An object to be tested or plotted. |
object |
A |
col |
The color used to fill the bars. See "Color Specification" in |
border |
The color of the borders around the bars. See |
... |
Additional arguments to be passed to the generic methods. |
Value
Meta-community diversity objects are lists containing:
MetaCommunity |
The name of the |
Type |
The type of diversity ("alpha", "beta" or "gamma"). |
Order |
The order of diversity |
Correction |
The estimation bias correction used to calculate diversity. |
Tree |
The phylogenetic or functional tree used to calculate phylodiversity. |
Normalized |
Logical. Indicates whether phylodiversity is normalized or proportional to the height of the tree. |
Weights |
A vector containing the weights of communities. |
Communities |
A vector containing the diversity of communities. |
Total |
The total diversity. |
is.MCdiversity
returns TRUE
if the object is of class MCdiversity
.
summary.MCdiversity
returns a summary of the object's value.