epgplot {emuR}

Plot palatographic data

Description

Function to plot palatograms from EPG compressed objects or from a 3D-palatographic array that is output from palate().

Usage

epgplot(
  epgdata,
  select = NULL,
  numbering = "times",
  gridlines = TRUE,
  mfrow = NULL,
  col = 1,
  mar = c(0.8, 0.1, 0.8, 0.1),
  xlim = NULL
)

Arguments

epgdata

An eight-columned EPG-compressed trackdata object, or an eight columned matrix of EPG-compressed trackdata, or a 3D palatographic array that is the output of palate()

select

A vector of times. Palatograms are plotted at these times only. Note: this argument should only be used if epgdata is temporally contiguous, i.e. the entire trackdata object contains palatograms at successive multiple times of the EPG sampling frequency. (as in coutts.epg$ftime). Defaults to NULL, in which case palatograms are plotted for all times available in epgdata.

numbering

Either "times" (default), or logical TRUE, or a character vector of the same length as the number of segments in epgdata. In the default case, the times at which the palatograms occur are printed above the palatograms. If logical TRUE, then the palatograms are numbered 1, 2, ... number of segments and this value is printed above the palatograms. If a character vector, then this must be the same length as the number of segments in epgdata.

gridlines

if TRUE (default) grid lines over the palatogram are drawn.

mfrow

By default, the function tries to work out a sensible number of rows and columns for plotting the palatograms. Otherwise, this can be user-specified, in which case mfrow is a vector of two integer numeric values.

col

specify a colour for plotting the filled EPG cells.

mar

A numerical vector of the form 'c(bottom, left, top, right)' which gives the number of lines of margin to be specified on the four sides of the plot. The default in this function is c(0.8, 0.1, 0.8, 0.1). (The default in the R plot() function is c(5, 4, 4, 2) + 0.1.

xlim

A numeric vector of two time values over which the epgdata should be plotted. Note: this argument should only be used if epgdata is temporally contiguous, i.e. the entire trackdata object contains palatograms at successive multiple times of the EPG sampling frequency. (as in coutts.epg$ftime). Defaults to NULL (plot all time values).

Details

The function plots 62 values arranged over an 8 x 8 grid with columns 1 and 8 unfilled for row 1. When there is a contact (1), the corresponding rectangle of the grid is filled otherwise the rectangle is empty.

Author(s)

Jonathan Harrington

See Also

epgai epgcog epggs palate

Examples

epgplot(polhom.epg[10,])

# as above but between times 1295 ms and 1330 ms
epgplot(polhom.epg[10,], xlim=c(1295, 1330))

# the same as above, but the data is first
# converted to a 3D palatographic array
p <- palate(polhom.epg[10,])
epgplot(p, xlim=c(1295, 1330))

# plot palatograms 2 and 8
epgplot(p[,,c(2, 8)])

# as above but
# no gridlines, different colour, numbering rather than times
epgplot(p[,,c(2, 8)], gridlines=FALSE, col="pink", numbering=TRUE)

# as above but with a user-specified title

epgplot(p[,,c(2, 8)], gridlines=FALSE, col="pink", numbering=c("s1", "s2"))

# plot the palatograms in the second
# segment of coutts.epg that are closest in time
# to 16377 ms and 16633 ms
epgplot(coutts.epg[2,], c(16377, 16633))