resultNest_4p_trigo {embryogrowth} | R Documentation |
Result of the fit using the nest database using trigonometric function
Description
Fit using the nest database using trigonometric function
Usage
resultNest_4p_trigo
Format
A list with fitted information about data(nest)
Details
Result of the fit using the nest database using trigonometric function
Author(s)
Marc Girondot marc.girondot@universite-paris-saclay.fr
References
Girondot, M., & Kaska, Y. (2014). A model to predict the thermal reaction norm for the embryo growth rate from field data. Journal of Thermal Biology, 45, 96-102. doi: 10.1016/j.jtherbio.2014.08.005
Examples
## Not run:
library(embryogrowth)
data(nest)
formated <- FormatNests(nest)
x <- ChangeSSM(temperatures = (200:350)/10,
parameters = resultNest_4p_SSM$par,
initial.parameters = structure(c(3, 20, 40, 32),
.Names = c("Max", "LengthB", "LengthE", "Peak")),
control=list(maxit=1000))
pfixed <- c(rK=2.093313)
resultNest_4p_trigo <- searchR(parameters=x$par, fixed.parameters=pfixed,
temperatures=formated, integral=integral.Gompertz, M0=1.7,
hatchling.metric=c(Mean=39.33, SD=1.92))
plotR(resultNest_4p_trigo, ylim=c(0, 3))
plotR(resultNest_4p_trigo, ylim=c(0, 3), ylimH = c(0, 0.9), show.hist=TRUE)
compare_AIC(SSM=resultNest_4p_SSM, trigonometric=resultNest_4p_trigo)
## End(Not run)
[Package embryogrowth version 9.1 Index]