cells_citeseq_mtx {dsb}

small example CITE-seq protein dataset for 87 surface protein in 2872 cells

Description

A matrix of raw UMI counts for surface proteins for surface proteins measured with CITE-seq antibodies. This data is used for example scripts in the dsb package. Raw data was processed with CITE-seq-Count.

Usage

cells_citeseq_mtx

Format

An R matrix, rows: 87 proteins, columns: 2872 cells

cells_citeseq_mtx

R matrix of cells by proteins; a random distribution of a maximum of 100 cells per cluster from the 30 clusters reported in Kotliarov et. al. 2020

References

Kotliarov et. al. 2020 Nat. Medicine