myotis {diemr}

Dataset of modified genotypes of bats

Description

A subset of single nucleotide polymorphisms in Myotis myotis from Harazim et al. (2021). The genotypes were modified for testing purposes in such a way that markers 15 and 17 now include additional indel and substitution alleles. Eight markers used in the dataset are monomorphic.

Format

vcf file with 14 individuals and 20 markers.

Details

The data is used to test conversion of genotype data from vcf to diem format with function vcf2diem.

Source

Harazim M., Pialek L., Pikula J., Seidlova V., Zukal J., Bachorec E., Bartonicka T., Kokurewicz T., Martinkova N. (2021) Associating physiological functions with genomic variability in hibernating bats. Evolutionary Ecology, 35, 291-308, doi: 10.1007/s10682-020-10096-4.

Examples

filename <- system.file("extdata", "myotis.vcf", package = "diemr")