emPolarise {diemr} | R Documentation |
Polarises a marker
Description
Changes encodings of genomic markers according to user specification.
Usage
emPolarise(origM, changePolarity = TRUE)
Arguments
origM |
character vector of genotypes comprising of _012 encodings. |
changePolarity |
logical scalar, indicating whether to leave the marker as is
( |
Value
Returns a character vector with polarised markers.
Note
Note that diem
and importPolarized
accept also a U
encoding for an unknown or third allele, but emPolarise
requires all U
to
be replaced with _
.
See Also
diem
for determining appropriate marker polarity with
respect to a barrier to geneflow.
Examples
emPolarise(c("0", "0", "1", "2", "2"), TRUE)
# [1] "2" "2" "1" "0" "0"
emPolarise(c("0", "_", "2", "2", "1"), FALSE)
# [1] "0" "_" "2" "2" "1"
[Package diemr version 1.4 Index]