heteroZygotTestCpp {detectRUNS}

Function to check whether a window is (loosely) heterozygous or not

Description

This is a core function. Parameters on how to consider a window heterozygous are here (maxHom, maxMiss)

Usage

heteroZygotTestCpp(x, gaps, maxHom, maxMiss, maxGap)

Arguments

x

vector of 0/1 genotypes (from genoConvert())

gaps

vector of differences between consecutive positions (gaps) in bps

maxHom

max n. of homozygous SNP in a heterozygous window

maxMiss

max n. of missing in a window

maxGap

max distance between consecutive SNP in a window to be still considered a potential run

Value

TRUE/FALSE (whether a window is heterozygous or NOT)