Package: denoiSeq Type: Package Title: Differential Expression Analysis Using a Bottom-Up Model Version: 0.1.1 Authors@R: c(person("Gershom", "Buri", email = "buri@aims.edu.gh", role = c("aut","cre")),person("Wilfred", "Ndifon", email = "ndifon@gmail.com", role = "aut")) Description: Given count data from two conditions, it determines which transcripts are differentially expressed across the two conditions using Bayesian inference of the parameters of a bottom-up model for PCR amplification. This model is developed in Ndifon Wilfred, Hilah Gal, Eric Shifrut, Rina Aharoni, Nissan Yissachar, Nir Waysbort, Shlomit Reich Zeliger, Ruth Arnon, and Nir Friedman (2012), , and results in a distribution for the counts that is a superposition of the binomial and negative binomial distribution. License: GPL-2 Encoding: UTF-8 LazyData: true RoxygenNote: 6.0.1 Imports: methods, stats, utils Suggests: knitr, rmarkdown VignetteBuilder: knitr, rmarkdown NeedsCompilation: no Packaged: 2018-01-31 20:03:47 UTC; buri Author: Gershom Buri [aut, cre], Wilfred Ndifon [aut] Maintainer: Gershom Buri Repository: CRAN Date/Publication: 2018-01-31 20:26:31 UTC