getBestAssociatedGeneSet {decode}

Get best associated functional gene sets for partitions of gene i

Description

Get best associated functional gene sets for partitions of gene i

Usage

getBestAssociatedGeneSet(pathway, all8Partitions, onePartition, MaxGene,
  minSupport)

Arguments

pathway

All functional gene sets

all8Partitions

All eight possible partitions for gene i

onePartition

The partition to be associated with the functional gene set

MaxGene

Number of genes in expression data

minSupport

Minimum support for functional gene set

Value

The adjusted p-values for the best associated gene set of the input partition