parseDrugBank {dbparser}R Documentation

parseDrugBank

Description

parses given DrugBank XML database into a dvobject. dvobject is a list of data.frames in which each data.frame represents a part of parsed data (i.e drugs, prices, carriers, ...)

Usage

parseDrugBank(
  db_path,
  drug_options = NULL,
  parse_salts = FALSE,
  parse_products = FALSE,
  references_options = NULL,
  cett_options = NULL
)

Arguments

db_path

string, full path for the DrugBank xml or zip file.

drug_options

character vector, list of sub drug related nodes names options to parse (default = NULL). Check drug_node_options() for all available options. If its value is 'NULL' ONLY 'drug_general_information' will be placed in the returned dvobject.

parse_salts

boolean, parse salts info (default = FALSE)

parse_products

boolean, parse products info (default = FALSE)

references_options

character vector, list of sub references related nodes names options to parse (default = NULL). Check references_node_options() for all available options.

cett_options

character vector, list of sub cett related nodes names options to parse (default = NULL). Check cett_nodes_options() for all available options.

Value

dvobject

See Also

Other parsers: cett_nodes_options(), drug_node_options(), references_node_options()


[Package dbparser version 2.0.2 Index]