manual_correction {dPCP}

Manual correction of dPCP cluster analysis

Description

This function builds an interactive app to manually correct the dPCP cluster analysis.

Usage

manual_correction(
  data,
  filename,
  save.plot = FALSE,
  format = "png",
  dpi = 300,
  color.blind = FALSE
)

Arguments

data

an object of class dPCP, inherited from dPCP.

filename

character. File name (no extension) for csv and pdf files to create on disk.

save.plot

logical. If TRUE the plots are exported to a file.

format

a string indicating the file format for the export. Available formats: 'eps', 'ps', 'tex', 'pdf', 'jpeg', 'tiff', 'png', 'bmp', 'svg', 'wmf'.

dpi

numeric. Image resolution.

color.blind

logical. If TRUE colors optimized for colorblind readers are used.

Value

A Shiny session.

Examples

library(dPCP)

#Find path of sample table and location of reference and input files
sampleTable <- system.file("extdata", "Template_sampleTable.csv",
                     package = "dPCP")

fileLoc <- system.file("extdata",package = "dPCP")

#dPCP analysis
results <- dPCP(sampleTable, system = "bio-rad", file.location = fileLoc,
                eps = 200, minPts = 50, save.template = FALSE,
                rain = TRUE)

manual_correction(results, filename = "manual_dPCR", save.plot = FALSE)