scanSD.cross {ctl}

scanSD.cross - Analyze the differences in standard deviation between two traits at a certain genetic marker (R/qtl cross object)

Description

Analyze the differences in standard deviation between two traits at a certain genetic marker

Usage

scanSD.cross(cross, phenocol = c(1,2), doRank = FALSE)

Arguments

cross

An object of class cross. See read.cross for details.

phenocol

Which phenotype column(s) should be plotted against each other, Default: phenotype 1 versus 2

doRank

Transform quantitative data into ranked data before analyzing the slope.

Details

TODO

Value

TODO

Note

TODO

Author(s)

Danny Arends [e-mail]
Maintainer: Danny Arends [e-mail]

References

TODO

See Also

• CTLscan - Main function to scan for CTL

• CTLsignificant - Significant interactions from a CTLscan

• CTLnetwork - Create a CTL network from a CTLscan

• image.CTLobject - Heatmap overview of a CTLscan

• plot.CTLscan - Plot the CTL curve for a single trait

Examples

  library(ctl)
  data(multitrait)      # Arabidopsis Thaliana (R/qtl cross object)

  sds <- scanSD.cross(multitrait)