QTLmapping {ctl}R Documentation

QTLmapping - QTL mapping method for CTL analysis

Description

Internal QTL mapping method used by the CTL analysis, associates every column in the genotypes with a single phenotype

Usage

QTLmapping(genotypes, phenotypes, phenocol = 1, verbose = TRUE)

Arguments

genotypes

Matrix of genotypes. (individuals x markers)

phenotypes

Matrix of phenotypes. (individuals x phenotypes)

phenocol

Which phenotype column(s) should we analyse. Default: Analyse a single phenotype.

verbose

Be verbose.

Details

TODO

Value

vector of LOD scores for each genotype column, for phenotype column phenocol

Note

TODO

Author(s)

Danny Arends Danny.Arends@gmail.com
Maintainer: Danny Arends Danny.Arends@gmail.com

References

TODO

See Also

Examples

  library(ctl)
  data(ath.metabolites) # Arabidopsis Thaliana dataset
  qtldata <- QTLmapping(ath.metab$genotypes, ath.metab$phenotypes, phenocol = 23)
  plot(qtldata)         # Plot the results of the QTL scan for the phenotype

[Package ctl version 1.0.0-7 Index]