CTLsignificant {ctl} | R Documentation |
CTLsignificant - Get all significant interactions from a genome-wide CTLscan
Description
Get all significant interactions from a genome-wide CTLscan.
Usage
CTLsignificant(CTLobject, significance = 0.05, what = c("names","ids"))
Arguments
CTLobject |
An object of class |
significance |
Significance threshold to set a genome wide False Discovery Rate (FDR). |
what |
Return trait and marker names or column numbers (for indexing). |
Details
TODO
Value
A matrix significant CTL interactions with 4 columns: trait, marker, trait, lod
Note
TODO
Author(s)
Danny Arends Danny.Arends@gmail.com
Maintainer: Danny Arends Danny.Arends@gmail.com
References
TODO
Examples
library(ctl)
data(ath.result)
all_interactions <- CTLsignificant(ath.result)
all_interactions[1:10, ]
trait1_interactions <- CTLsignificant(ath.result[[1]])
trait1_interactions
[Package ctl version 1.0.0-10 Index]