ath.metabolites {ctl}R Documentation

Example metabolite expression data from Arabidopsis Thaliana on 24 metabolites.

Description

Arabidopsis recombinant inbred lines by selfing. There are 162 lines, 24 phenotypes, and 117 markers on 5 chromosomes stored as a list with 3 matrices: genotypes, phenotypes, map

Usage

  data(ath.metabolites)

Format

Data stored in a list holding 3 matrices genotypes, phenotypes and map

Details

Arabidopsis recombinant inbred lines by selfing. There are 162 lines, 24 phenotypes, and 117 markers on 5 chromosomes.

Source

Part of the Arabidopsis RIL selfing experiment with Landsberg Erecta (Ler) and Cape Verde Islands (Cvi) with 162 individuals scored (with errors) at 117 markers. Dataset obtained from GBIC - Groningen BioInformatics Centre, University of Groningen.

References

Examples

  library(ctl)
  data(ath.metabolites)           # Arabidopsis thaliana dataset

  ath.metab$genotypes[1:5, 1:5]   # ath.metab is the short name
  ath.metab$phenotypes[1:5, 1:5]
  ath.metab$map[1:5, ]

[Package ctl version 1.0.0-7 Index]