crew_class_launcher_sge {crew.cluster}

SGE launcher class

Description

R6 class to launch and manage SGE workers.

Details

See crew_launcher_sge().

Attribution

The template files at https://github.com/mschubert/clustermq/tree/master/inst informed the development of the crew launcher plugins in crew.cluster, and we would like to thank Michael Schubert for developing clustermq and releasing it under the permissive Apache License 2.0. See the NOTICE and README.md files in the crew.cluster source code for additional attribution.

Super classes

crew::crew_class_launcher -> crew.cluster::crew_class_launcher_cluster -> crew_class_launcher_sge

Active bindings

sge_cwd

See crew_launcher_sge().

sge_envvars

See crew_launcher_sge().

sge_log_output

See crew_launcher_sge().

sge_log_error

See crew_launcher_sge().

sge_log_join

See crew_launcher_sge().

sge_memory_gigabytes_limit

See crew_launcher_sge().

sge_memory_gigabytes_required

See crew_launcher_sge().

sge_cores

See crew_launcher_sge().

sge_gpu

See crew_launcher_sge().

Methods

Public methods

• crew_class_launcher_sge$new()

• crew_class_launcher_sge$validate()

• crew_class_launcher_sge$script()

Inherited methods

• crew::crew_class_launcher$active()
• crew::crew_class_launcher$booting()
• crew::crew_class_launcher$call()
• crew::crew_class_launcher$done()
• crew::crew_class_launcher$errors()
• crew::crew_class_launcher$forward()
• crew::crew_class_launcher$launch()
• crew::crew_class_launcher$rotate()
• crew::crew_class_launcher$scale()
• crew::crew_class_launcher$set_name()
• crew::crew_class_launcher$settings()
• crew::crew_class_launcher$start()
• crew::crew_class_launcher$summary()
• crew::crew_class_launcher$tally()
• crew::crew_class_launcher$terminate()
• crew::crew_class_launcher$terminate_workers()
• crew::crew_class_launcher$unlaunched()
• crew::crew_class_launcher$wait()
• crew.cluster::crew_class_launcher_cluster$launch_worker()
• crew.cluster::crew_class_launcher_cluster$terminate_worker()

Method new()

SGE launcher constructor.

Usage

crew_class_launcher_sge$new(
  name = NULL,
  seconds_interval = NULL,
  seconds_timeout = NULL,
  seconds_launch = NULL,
  seconds_idle = NULL,
  seconds_wall = NULL,
  tasks_max = NULL,
  tasks_timers = NULL,
  reset_globals = NULL,
  reset_packages = NULL,
  reset_options = NULL,
  garbage_collection = NULL,
  launch_max = NULL,
  tls = NULL,
  verbose = NULL,
  command_submit = NULL,
  command_terminate = NULL,
  script_directory = NULL,
  script_lines = NULL,
  sge_cwd = NULL,
  sge_envvars = NULL,
  sge_log_output = NULL,
  sge_log_error = NULL,
  sge_log_join = NULL,
  sge_memory_gigabytes_limit = NULL,
  sge_memory_gigabytes_required = NULL,
  sge_cores = NULL,
  sge_gpu = NULL
)

Arguments

name

See crew_launcher_sge().

seconds_interval

See crew_launcher_slurm().

seconds_timeout

See crew_launcher_slurm().

seconds_launch

See crew_launcher_sge().

seconds_idle

See crew_launcher_sge().

seconds_wall

See crew_launcher_sge().

tasks_max

See crew_launcher_sge().

tasks_timers

See crew_launcher_sge().

reset_globals

See crew_launcher_sge().

reset_packages

See crew_launcher_sge().

reset_options

See crew_launcher_sge().

garbage_collection

See crew_launcher_sge().

launch_max

See crew_launcher_sge().

tls

See crew_launcher_sge().

verbose

See crew_launcher_sge().

command_submit

See crew_launcher_sge().

command_terminate

See crew_launcher_sge().

script_directory

See crew_launcher_sge().

script_lines

See crew_launcher_sge().

sge_cwd

See crew_launcher_sge().

sge_envvars

See crew_launcher_sge().

sge_log_output

See crew_launcher_sge().

sge_log_error

See crew_launcher_sge().

sge_log_join

See crew_launcher_sge().

sge_memory_gigabytes_limit

See crew_launcher_sge().

sge_memory_gigabytes_required

See crew_launcher_sge().

sge_cores

See crew_launcher_sge().

sge_gpu

See crew_launcher_sge().

Returns

an SGE launcher object.

Method validate()

Validate the launcher.

Usage

crew_class_launcher_sge$validate()

Returns

NULL (invisibly). Throws an error if a field is invalid.

Method script()

Generate the job script.

Usage

crew_class_launcher_sge$script(name)

Arguments

name

Character of length 1, name of the job. For inspection purposes, you can supply a mock job name.

Details

Includes everything except the worker-instance-specific job name and the worker-instance-specific call to crew::crew_worker(), both of which get inserted at the bottom of the script at launch time.

Returns

Character vector of the lines of the job script.

Examples

if (identical(Sys.getenv("CREW_EXAMPLES"), "true")) {
launcher <- crew_launcher_sge(
  sge_cores = 2,
  sge_memory_gigabytes_required = 4
)
launcher$script(name = "my_job_name")
}

See Also

Other sge: crew_class_monitor_sge, crew_controller_sge(), crew_launcher_sge(), crew_monitor_sge()

Examples

## ------------------------------------------------
## Method `crew_class_launcher_sge$script`
## ------------------------------------------------

if (identical(Sys.getenv("CREW_EXAMPLES"), "true")) {
launcher <- crew_launcher_sge(
  sge_cores = 2,
  sge_memory_gigabytes_required = 4
)
launcher$script(name = "my_job_name")
}