ibd_phylo_taxa {corncob}

IBD data, taxonomy data frame.

Description

Taxonomy data from a phyloseq object from an IBD microbiome study.

Usage

ibd_phylo_taxa

Format

A data frame of taxonomy data.

References

Papa, E., Docktor, M., Smillie, C., Weber, S., Preheim, S. P., Gevers, D., Giannoukos, G., Ciulla, D., Tabbaa, D., Ingram, J., Schauer, D. B., Ward, D. V., Korzenik, J. R., Xavier, R. J., Bousvaros, A., Alm, E. J. & Schauer, D. B. (2012). Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease. PloS One, 7(6), e39242. <doi.org/10.1371/journal.pone.0039242>.

Duvallet, C., Gibbons, S., Gurry, T., Irizarry, R., & Alm, E. (2017). MicrobiomeHD: the human gut microbiome in health and disease [Data set]. Zenodo. <doi.org/10.5281/zenodo.1146764>.