HDIbetabinom {corncob}

Get highest density interval of beta-binomial

Description

Get highest density interval of beta-binomial

Usage

HDIbetabinom(percent, M, mu, phi)

Arguments

percent

Numeric. Percent interval desired.

M

Numeric vector of sequencing depth

mu

Numeric vector of abundance parameter

phi

Numeric vector of dispersion parameter

Value

List where lower represents the lower bound and upper represents the upper bound

Examples

data(soil_phylum_small_otu1)
mod <- bbdml(formula = cbind(W, M - W) ~ DayAmdmt,
phi.formula = ~ DayAmdmt,
data = soil_phylum_small_otu1)
HDIbetabinom(.95, M = mod$M[1], mu = mod$mu.resp[1], phi = mod$phi.resp[1])