plot_trait_manhat {cophescan}

Plot region Manhattan for a trait highlighting the queried variant

Description

Plot region Manhattan for a trait highlighting the queried variant

Usage

plot_trait_manhat(trait.dat, querysnpid, alt.snpid = NULL)

Arguments

trait.dat

dataset used as input for running cophescan

querysnpid

the id of the causal variant as present in trait.dat$snp, plotted in red

alt.snpid

the id of the other variants as a vector to be plotted, plotted in blue

Value

regional manhattan plot