cophe_plot {cophescan} | R Documentation |
cophe_plots showing the Ha and Hc of all traits and labelled above the specified threshold
Description
cophe_plots showing the Ha and Hc of all traits and labelled above the specified threshold
Usage
cophe_plot(
multi.dat,
querysnpid,
query_trait_names,
thresh_Hc = 0.5,
thresh_Ha = 0.5,
beta_p = NULL,
traits.dat = NULL,
group_pheno = NULL
)
Arguments
multi.dat |
multi trait cophescan results returned from cophe.multitrait or multitrait.simplify |
querysnpid |
query variant (only a single variant for PheWAS plots) |
query_trait_names |
list of phenotype names |
thresh_Hc |
Hc threshold to be displayed |
thresh_Ha |
Ha threshold to be displayed |
beta_p |
data.frame (from the |
traits.dat |
list of multi-trait coloc structured datasets |
group_pheno |
Vector with additional grouping of phenotypes |
Value
cophescan plots of Ha and Hc
See Also
cophe.single
, cophe.susie
, cophe.multitrait
, , multitrait.simplify
[Package cophescan version 1.4.1 Index]