cophe_heatmap {cophescan}

Heatmap of multi-trait cophescan results

Description

Heatmap of multi-trait cophescan results

Usage

cophe_heatmap(
  multi.dat,
  querysnpid,
  query_trait_names,
  thresh_Hc = 0.5,
  thresh_Ha = 0.5,
  ...
)

Arguments

multi.dat

multi trait cophescan results returned from cophe.multitrait or formatted in the same way with multitrait.simplify

querysnpid

query variant

query_trait_names

names of phenotypes corresponding to the multi.dat results

thresh_Hc

Hc threshold to be displayed

thresh_Ha

Ha threshold to be displayed

...

additional arguments to be passed to pheatmap

Value

heatmap of posterior probabilities of the phentypes above the set threshold