SNPs {compareGroups}R Documentation

SNPs in a case-control study

Description

SNPs data.frame contains selected SNPs and other clinical covariates for cases and controls in a case-control study

SNPs.info.pos data.frame contains the names of the SNPs included in the data set 'SNPs' including their chromosome and their genomic position

Usage

data(SNPs)

Format

'SNPs' data.frame contains the following columns:

id identifier of each subject
casco case or control status: 0-control, 1-case
sex gender: Male and Female
blood.pre arterial blood presure
protein protein levels
snp10001 SNP 1
snp10002 SNP 2
... ...
snp100036 SNP 36

'SNPs.info.pos' data.frame contains the following columns: A data frame with 35 observations on the following 3 variables.

snp

name of SNP

chr

name of chromosome

pos

genomic position

Source

Data obtained from the <code>SNPassoc</code> package.


[Package compareGroups version 4.8.0 Index]