map_mask {coloc}

find the next most significant SNP, masking a list of sigsnps

Description

Internal helper function for finemap.signals

Usage

map_mask(D, LD, r2thr = 0.01, sigsnps = NULL)

Arguments

D

dataset in standard coloc format

LD

named matrix of r

r2thr

mask all snps with r2 > r2thr with any in sigsnps

sigsnps

names of snps to mask

Value

named numeric - Z score named by snp

Author(s)

Chris Wallace