| logbf_to_pp {coloc} | R Documentation |
logbf 2 pp
Description
generic convenience function to convert logbf matrix to PP matrix
Usage
logbf_to_pp(bf, pi, last_is_null)
Arguments
bf |
an L by p or p+1 matrix of log Bayes factors |
pi |
either a scalar representing the prior probability for any snp to be causal, or a full vector of per snp / null prior probabilities |
last_is_null |
TRUE if last value of the bf vector or last column of a bf matrix relates to the null hypothesis of no association. This is standard for SuSiE results, but may not be for BF constructed in other ways. |
Value
matrix of posterior probabilities, same dimensions as bf
Author(s)
Chris Wallace
[Package coloc version 5.2.3 Index]