expressionPlot {clusterCons} | R Documentation |
Generate a profile plot for the data partitioned by cluster membership.
Description
This function uses the lattice
function xyplot
to generate a profile plot of the data values grouped by cluster in a multi-panel plot. The function
takes as input the original data.frame() and a valid "consmatrix"
class object (see consmatrix-class
) by which to segregate the data.
Usage
expressionPlot(x,cm);
Arguments
x |
the original data.frame() object used in the clustering. |
cm |
a valid |
Value
No return value, called for side effects
Author(s)
Dr. T. Ian Simpson ian.simpson@ed.ac.uk
References
Merged consensus clustering to assess and improve class discovery with microarray data. Simpson TI, Armstrong JD and Jarman AP. BMC Bioinformatics 2010, 11:590.
See Also
Examples
#load up the data set
data(sim_profile);
#load up an example cluscomp result with this data
data('testcmr');
#plot the expression profiles
expressionPlot(sim_profile,testcmr$e1_kmeans_k4);
[Package clusterCons version 1.2 Index]