| annotatePeaks {cinaR} | R Documentation |
annotatePeaks
Description
Runs DA pipeline and makes it ready for enrichment analyses
Usage
annotatePeaks(cp, reference.genome, show.annotation.pie = FALSE, verbose)
Arguments
cp |
bed formatted consensus peak matrix: CHR, START, STOP and raw peak counts (peaks by 3+samples) |
reference.genome |
genome of interested species. It should be 'hg38', 'hg19' or 'mm10'. |
show.annotation.pie |
shows the annotation pie chart produced with ChipSeeker |
verbose |
prints messages through running the pipeline |
Value
DApeaks returns DA peaks
[Package cinaR version 0.2.3 Index]