| RPvectors {chemometrics} | R Documentation |
Generating random projection directions
Description
A matrix with pandom projection (RP) directions (columns) is generated according to a chosen distributions; optionally the random vectors are orthogonalized.
Usage
RPvectors(a, m, ortho = "none", distr = "uniform", par_unif = c(-1, 1),
par_norm = c(0, 1), par_eq = c(-1, 0, 1), par_uneq = c(-sqrt(3), 0, sqrt(3)),
par_uneqprob = c(1/6, 2/3, 1/6))
Arguments
a |
number of generated vectors (>=1) |
m |
dimension of generated vectors (>=2) |
ortho |
orthogonalization of vectors: "none" ... no orthogonalization (default); "onfly" ... orthogonalization on the fly after each generated vector; "end" ... orthogonalization at the end, after the whole random matrix was generated |
distr |
distribution of generated random vector components: "uniform" ... uniformly distributed in range par_unif (see below); default U[-1, +1]; "normal" ... normally distributed with parameters par_norm (see below); typical N(0, 1); "randeq" ... random selection of values par_eq (see below) with equal probabilities; typically -1, 0, +1; "randuneq" ... random selection of values par_uneq (see below) with probabilties par_uneqprob (see below); typical -(3)^0.5 with probability 1/6; 0 with probability 2/3; +(3)^0.5 with probability 1/6 |
par_unif |
parameters for range for distr=="uniform"; default to c(-1,1) |
par_norm |
parameters for mean and sdev for distr=="normal"; default to c(0,1) |
par_eq |
values for distr=="randeq" which are replicated; default to c(-1,0,1) |
par_uneq |
values for distr=="randuneq" which are replicated with probabilties par_uneqprob; default to c(-sqrt(3),0,sqrt(3)) |
par_uneqprob |
probabilities for distr=="randuneq" to replicate values par_uneq; default to c(1/6,2/3,1/6) |
Details
The generated random projections can be used for dimension reduction of multivariate data. Suppose we have a data matrix X with n rows and m columns. Then the call B <- RPvectors(a,m) will produce a matrix B with the random directions in its columns. The matrix product X times t(B) results in a matrix of lower dimension a. There are several options to generate the projection directions, like orthogonal directions, and different distributions with different parameters to generate the random numbers. Random Projection (RP) can have comparable performance for dimension reduction like PCA, but gives a big advantage in terms of computation time.
Value
The value returned is the matrix B with a columns of length m, representing the random vectors
Author(s)
Peter Filzmoser <P.Filzmoser@tuwien.ac.at>
References
K. Varmuza, P. Filzmoser, and B. Liebmann. Random projection experiments with chemometric data. Journal of Chemometrics. To appear.
Examples
B <- RPvectors(a=5,m=10)
res <- t(B)