compute_number_jumps {cfda}R Documentation

Compute the number of jumps

Description

For each individual, compute the number of jumps performed

Usage

compute_number_jumps(data, countDuplicated = FALSE)

Arguments

data

data.frame containing id, id of the trajectory, time, time at which a change occurs and state, associated state.

countDuplicated

if TRUE, jumps in the same state are counted as jump

Value

A vector containing the number of jumps for each individual

Author(s)

Cristian Preda, Quentin Grimonprez

See Also

hist.njump

Examples

# Simulate the Jukes-Cantor model of nucleotide replacement 
K <- 4
PJK <- matrix(1/3, nrow = K, ncol = K) - diag(rep(1/3, K))
lambda_PJK <- c(1, 1, 1, 1)
d_JK <- generate_Markov(n = 10, K = K, P = PJK, lambda = lambda_PJK, Tmax = 10)

# compute the number of jumps
nJump <- compute_number_jumps(d_JK)


[Package cfda version 0.9.9 Index]