Package: cancerGI Type: Package Title: Analyses of Cancer Gene Interaction Version: 1.0.1 Date: 2023-08-30 Author: Audrey Qiuyan Fu and Xiaoyue Wang Maintainer: Audrey Q. Fu Description: Functions to perform the following analyses: i) inferring epistasis from RNAi double knockdown data; ii) identifying gene pairs of multiple mutation patterns; iii) assessing association between gene pairs and survival; and iv) calculating the smallworldness of a graph (e.g., a gene interaction network). Data and analyses are described in Wang, X., Fu, A. Q., McNerney, M. and White, K. P. (2014). Widespread genetic epistasis among breast cancer genes. Nature Communications. 5 4828. . Depends: R (>= 2.10) License: GPL (>= 2) LazyLoad: yes LazyData: yes Imports: systemfit, qvalue, survival, reshape2, igraph NeedsCompilation: no Packaged: 2023-09-01 04:41:38 UTC; audreyq.fu Repository: CRAN Date/Publication: 2023-09-07 06:52:33 UTC