biod_example {canaper}R Documentation

Biodiverse example data

Description

Fictional data for testing purposes from Biodiverse.

Usage

biod_example

Format

A list with two elements:

phy

Phylogeny with 31 tips

comm

Community matrix with 127 sites and 31 species. Data are counts, i.e., the number of times a species was observed in a grid cell.

Details

Corresponds to the the community matrix ("groups" object) and phylogeny from the Biodiverse example_project.bps. # nolint

References

Laffan, S.W., Lubarsky, E. & Rosauer, D.F. (2010) Biodiverse, a tool for the spatial analysis of biological and related diversity. Ecography. Vol 33, 643-647 (Version 3.1). doi:10.1111/j.1600-0587.2010.06237.x

Examples

# Example phylogeny
biod_example$phy
# Example community
biod_example$comm[1:5, 1:5]

[Package canaper version 1.0.0 Index]