| patternPanel {bulkAnalyseR} | R Documentation |
Generate the expression patterns panel of the shiny app
Description
These are the UI and server components of the expression patterns
panel of the shiny app. It is generated by including 'Patterns' in the
panels.default argument of generateShinyApp.
Usage
patternPanelUI(id, metadata, show = TRUE)
patternPanelServer(id, expression.matrix, metadata, anno)
Arguments
id |
the input slot that will be used to access the value |
metadata |
a data frame containing metadata for the samples contained
in the expression.matrix; must contain at minimum two columns:
the first column must contain the column names of the expression.matrix,
while the last column is assumed to contain the experimental conditions
that will be tested for differential expression; a list (of the same
length as modality) can be provided if #' |
show |
whether to show the panel or not; default is TRUE; there for compatibility with specifying panels to show |
expression.matrix |
the expression matrix; rows correspond to genes and
columns correspond to samples; usually preprocessed by
|
anno |
annotation data frame containing a match between the row names
of the expression.matrix (usually ENSEMBL IDs) and the gene names that
should be rendered within the app and in output files; this object is
created by |
Value
The UI and Server components of the shiny module, that can be used within the UI and Server definitions of a shiny app.