boa.plot.geweke {boa} | R Documentation |
Creates a single plot of the Geweke convergence diagnostics within different line segments for a parameter in an MCMC sequence.
boa.plot.geweke(lname, pname, bins = boa.par("geweke.bins"),
p.first = boa.par("geweke.first"), p.last = boa.par("geweke.last"),
alpha = boa.par("alpha"), annotate = boa.par("legend"))
lname |
Character string giving the name of the desired MCMC sequence in the working session list of sequences. |
pname |
Character string giving the name of the parameter to be plotted. |
bins |
Number of line segments within the MCMC sequence at which to plot the Geweke convergence diagnostics. The ith line segment contains the last ((bins - i + 1) / bins)*100 bins. This may lead to segments in which there are too few iterations to compute the convergence diagnostics. Such segments, if they exist, are automatically omitted from the calculations. |
p.first |
Proportion of iterations to include in the first window. |
p.last |
Proportion of iterations to include in the last window. |
alpha |
Alpha level for the rejection region lines drawn on the graph. |
annotate |
Logical value indicating that a legend be included in the plot. |
A logical value indicating that the plot was successfully created.
Brian J. Smith, Nicky Best, Kate Cowles
boa.geweke
, boa.plot
,
boa.print.geweke